Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934705.1_cds_XP_016480716.1_72128
CDS Infomation

[gene=LOC107801828] [db_xref=GeneID:107801828] [protein=AMSH-like ubiquitin thioesterase 3 isoform X2] [protein_id=XP_016480716.1] [location=join(86663..86929,87639..87703,87825..87900,88063..88263,88652..88746,89418..89523,89605..89651,89831..90161,90342..90431,90527..90589,91122..91196,91920..92015)] [gbkey=CDS]
Sequence

ATGACAAATAAGAAGCTTAACACAATAATCATTGAAATTATTCTTCTTTCTCTTAAATTA
AAAGTTAAAACCACTCGAGGGAAACCAACTGGACTACCATTTTTCTCAATCTCTAAAGCC
ACATCGTCGGAAATTTCCCATAATCTCGCCGGAAGAATGAGACGGCCGGCGACTATGAAC
GTCGACGCGATGACTCGGAAAGTCGCCGTCGATAATCGAATTCCTCTCCGCAATTACTAT
CGAATCGCCAATAATCTCCTCCGACAGGCCAATATTCACCGTGGGGAGAAGAATATCATA
GACTTGTATATAATACTAATGAGATATTCAAGTTTGGTTACTGAAACAATACCCGACCAT
CGAGACTACCAAGCTTTGCATCCAGAAGAAAGAGCATTATCGAAAAGGATGCTCTCAACA
GTGCTAGATGAACTAGAGGGTTTAAAACCGGAATTCCAGCGCCAGCGGAAAAGAATGGAT
AAAGCTCAAGCAGCAGCTCAGACTTCCCAACTTAATAATCAGGAGAACCCTCCCTACAGA
TCAGTTGGAAATTCTTTAGTACGGCCCTATACCAACAATAAAGCATCTTCTGATTATGAC
AATAAATGGGCCATCAGCAATGCACCTTCATCTTTGTGGAAGCAGAATAAAGATTACTCT
GGTGTTTCATCCTCGAGTTTGATCGATATGCAGTTCCAGAAGCTATCTCTCAATTTTCCT
GTTCCAAAGCAAGAAACACTGTCAAGGCACTCGCTTTTAGGCCCAAATGGTCTTCATGGT
CAATGGTCCGGACCTAGTTCCAAGATAAAGGTGAATTACCCAGCATATGCCGATTTAAGT
TCAAATGAGCTTTTGAGCCTCAATCAGGTTGCTGATGATGGCTCATTCATGTCTAATGAC
ACTGGCTTGAAGGTGGATAAGTCTCCTATGGAATCGGTTCTTTCTTTGGATGATGGACGG
TGGTTACACCCTTCTGAGGATTCTTGTTCTCCATTTTTTGATGATATGCGGAGTGATCAT
ATTCCTTTAAGTAACTTAAGGCAGCCTTCGCCGCCTCCCGTTCTGGCGCAAATACAACAA
GAATTTCATCCCATATCTCCATCCAAAGTTGCAGATCCAAGACCTGGACCAGCTAAGTCC
TTTCAGGATGGACCACCTGGTTCAAACTCTTATCAACATTTGCATGTTCCAGTGAGACTG
ATGGAAGATTTCTTAAGATTAGCTCGAGAAAATACAGCAAAGAATTTAGAAACTTGTGCT
GTTCTTGCAGGTTCACTGAGGAACCGTGTTTTTCACATCACTACTCTTATTGTCCCAAAG
CAGGAGTCAACTTCAGATTCTTGTTCAACATTGAATGAAGAAGAAATTTTTGAGGTTCAG
GACAAGCTCTCTCTCTTTCCTCTTGGTTGGATACATGTCATTTCATGTGATATTAAAAAT
ACGATAATAAATAATCCAGTTTGCATAGTTTTGGCCTTCCATTTTGGTATATACTCTTGG
TTTTTGGGTTAG

Peptide Sequence

PEP ID

XP_016480716.1
PEP Infomation

PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X2 [Nicotiana tabacum]
Sequence

MTNKKLNTIIIEIILLSLKLKVKTTRGKPTGLPFFSISKATSSEISHNLAGRMRRPATMN
VDAMTRKVAVDNRIPLRNYYRIANNLLRQANIHRGEKNIIDLYIILMRYSSLVTETIPDH
RDYQALHPEERALSKRMLSTVLDELEGLKPEFQRQRKRMDKAQAAAQTSQLNNQENPPYR
SVGNSLVRPYTNNKASSDYDNKWAISNAPSSLWKQNKDYSGVSSSSLIDMQFQKLSLNFP
VPKQETLSRHSLLGPNGLHGQWSGPSSKIKVNYPAYADLSSNELLSLNQVADDGSFMSND
TGLKVDKSPMESVLSLDDGRWLHPSEDSCSPFFDDMRSDHIPLSNLRQPSPPPVLAQIQQ
EFHPISPSKVADPRPGPAKSFQDGPPGSNSYQHLHVPVRLMEDFLRLARENTAKNLETCA
VLAGSLRNRVFHITTLIVPKQESTSDSCSTLNEEEIFEVQDKLSLFPLGWIHVISCDIKN
TIINNPVCIVLAFHFGIYSWFLG

Transcript Sequence

Gene sequence data has not been registered.